Original research article
Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, Knight R, Fierer N. 2011. The under-recognized dominance of verrucomicrobia in soil bacterial communities. Soil Biol. Biochem. 43:1450-1455. https://doi.org/10.1016/j.soilbio.2011.03.012
10.1016/j.soilbio.2011.03.01222267877PMC3260529Berruti A, Lumini E, Balestrini R, Bianciotto V. 2016. Arbuscular mycorrhizal fungi as natural biofertilizers: Let’s benefit from past successes. Front. Microbiol. 6:1559. https://doi.org/10.3389/fmicb.2015.01559
10.3389/fmicb.2015.0155926834714PMC4717633Bulgarelli D, Rott M, Schlaeppi K, Ver Loren van Themaat E, Ahmadinejad N, Assenza F, Rauf P, Huettel B, Reinhardt R, Schmelzer E, et al. 2012. Revealing structure and assembly cues for arabidopsis root-inhabiting bacterial microbiota. Nature 488:91-95. https://doi.org/10.1038/nature11336
10.1038/nature11336Cha JY, Han SJ, Hong HJ, Cho HJ, Kim DR, Kwon YH, Kwon SK, Crüsemann M, Lee YB, Kim JF, et al. 2016. Microbial and biochemical basis of a fusarium wilt-suppressive soil. The ISME Journal 10:119-129. https:// doi.org/10.1038/ismej.2015.95
10.1038/ismej.2015.9526057845PMC4681868Conrad R. 2007. Microbial ecology of methanogens and methanotrophs. Advances in Agronomy 96:1-63. https:// doi.org/10.1016/S0065-2113(07)96005-8
10.1016/S0065-2113(07)96005-8Das AK, Lee DS, Woo YJ, Sultana S, Mahmud A, Yun BW. 2025. The impact of flooding on soil microbial communities and their functions: A review. Stresses 5:30. https://doi.org/10.3390/stresses5020030
10.3390/stresses5020030DeBruyn JM, Nixon LT, Fawaz MN, Johnson AM, Radosevich M. 2011. Global biogeography and quantitative seasonal dynamics of gemmatimonadetes in soil. Appl. Environ. Microbiol. 77:6295-6300. https://doi.org/ 10.1128/AEM.05005-11
10.1128/AEM.05005-1121764958PMC3165389Deng L, Fu L, Zhang K, Shen Y, Feng G, Zhang L, Li H, Liu C. 2022. Effects of fertilizer and waterlogging on the diversity and functioning of the microbial community in greenhouse cultivation soil. Chem. Biol. Technol. Agric. 9:31. https://doi.org/10.1186/s40538-022-00298-z
10.1186/s40538-022-00298-zFan Y, Jia Y, Zhang X, Geng G, Liu R, Shen L, Hu J, Hao X. 2024. Conversion to greenhouse cultivation from continuous corn production decreases soil bacterial diversity and alters community structure. Agronomy 14:2144. https://doi.org/10.3390/agronomy14092144
10.3390/agronomy14092144Ferrari R, Gautier V, Silar P. 2021. Lignin degradation by ascomycetes. pp. 77-113. In: Advances in Botanical Research: Wood Degradation and Ligninolytic Fungi, Volume 99. Elsevier B.V., Amsterdam, Netherlands.
10.1016/bs.abr.2021.05.006Fierer N, Bradford MA, Jackson RB. 2007. Toward an ecological classification of soil bacteria. Ecology 88: 1354-1364. https://doi.org/10.1890/05-1839
10.1890/05-1839Fierer N. 2017. Embracing the unknown: disentangling the complexities of the soil microbiome. Nat. Rev. Microbiol. 15:579-590. https://doi.org/10.1038/nrmicro.2017.87
10.1038/nrmicro.2017.87Francioli D, Schulz E, Lentendu G, Wubet T, Buscot F, Reitz T. 2016. Mineral vs. organic amendments: microbial community structure, activity and abundance of agriculturally relevant microbes are driven by long-term fertilization strategies. Front. Microbiol. 7:1446. https://doi.org/10.3389/fmicb.2016.01446
10.3389/fmicb.2016.0144627683576PMC5022044Fritze H, Pietikäinen J, Pennanen T. 2000. Distribution of microbial biomass and community structure along a climatic gradient. J. Ind. Microbiol. Biotechnol. 24:246-252.
García I, Marín‑Guirao JI, de Cara M. 2025. Native bacteria from a mediterranean greenhouse associated to soil health and suppressiveness. Front. Microbiol. (Terrestrial Microbiology). https://doi.org/10.3389/fmicb.2025.1484219
10.3389/fmicb.2025.148421940657496PMC12246977Griffiths RI, Thomson BC, James P, Bell T, Bailey M, Whiteley AS. 2011. The bacterial biogeography of british soils. Environ. Microbiol. 13:1642-1654. https://doi.org/10.1111/j.1462-2920.2011.02480.x
10.1111/j.1462-2920.2011.02480.xGschwend F, Aregger K, Gramlich A, Walter T, Widmer F. 2020. Periodic waterlogging consistently shapes agricultural soil microbiomes by promoting specific taxa. Appl. Soil Ecol. 155:103623. https://doi.org/10.1016/j.apsoil.2020.103623 j.apsoil.2020.103623
10.1016/j.apsoil.2020.103623Hartmann M, Frey B, Mayer J, Mäder P, Widmer F. 2015. Distinct soil microbial diversity under long‑term organic and conventional farming. The ISME Journal 9:1177-1194. https://doi.org/10.1038/ismej.2014.210
10.1038/ismej.2014.21025350160PMC4409162Janssen PH. 2006. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microbiol. 72:1719-1728. https://doi.org/10.1128/AEM.72.3.1719-1728.2006
10.1128/AEM.72.3.1719-1728.200616517615PMC1393246Jesus EDC, Marsh TL, Tiedje JM, Moreira FMS. 2009. Changes in land use alter the structure of bacterial communities in Western Amazon soils. ISME J. 3:1004-1011. https://doi.org/10.1038/ismej.2009.47
10.1038/ismej.2009.47Kim DH, Moon JY, Hong SY, Ahn H, Yoon YW, Kim HJ, Lee SY, Kim JW, Han Eh, Kim SY, et al. 2023. Comparative analysis of microbial community characteristic of acidic and neutral soils in Korean orchards. Korean J. Soil Sci. Fert. 56:449-462. https://doi.org/10.7745/KJSSF.2023.56.4.449
10.7745/KJSSF.2023.56.4.449Lauber CL, Strickland MS, Bradford MA, Fierer N. 2008. The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol. Biochem. 40:2407-2415. https://doi.org/10.1016/j.soilbio.2008.05.021
10.1016/j.soilbio.2008.05.021Lee S, Kim H, Kim S, Kwak K, Ko S. 2025. Isolation and characterization of plant growth-promoting rhizobacteria from soil. Korean J. Soil Sci. Fert. 58:27-37. https://doi.org/10.7745/KJSSF.2025.58.1.027
10.7745/KJSSF.2025.58.1.027Lee SA, Kim JM, Kim Y, Joa JH, Kang SS, Ahn JH, Kim M, Song J, Weon HY. 2020. Different types of agricultural land use drive distinct soil bacterial communities. Scientific Reports 10:17418. https://doi.org/10.1038/s41598-020-74193-8
10.1038/s41598-020-74193-833060673PMC7562711Li L, Zhao C, Chen Q, Liu T, Li L, Liu X, Wang X. 2022a. Study on microbial community structure and soil nitrogen accumulation in greenhouse vegetable fields with different planting years. Agronomy 12:1911. https://doi.org/10.3390/agronomy12081911
10.3390/agronomy12081911Li T, Cui L, Song X, Cui X, Wei Y, Tang L, Mu Y, Xu Z. 2022b. Wood decay fungi: an analysis of worldwide research. J. soils sediments 22:1688-1702. https://doi.org/10.1007/s11368-022-03225-9
10.1007/s11368-022-03225-9Liao J, Liang Y, Huang D. 2018. Organic farming improves soil microbial abundance and diversity under greenhouse condition: A case study in Shanghai (Eastern China). Sustainability 10:3825. https://doi.org/10.3390/su10103825
10.3390/su10103825Lozupone CA, Knight R. 2007. Global patterns in bacterial diversity. Proc. Natl. Acad. Sci. U.S.A. 104:11436- 11440. https://doi.org/10.1073/pnas.0611525104
10.1073/pnas.061152510417592124PMC2040916Mahapatra S, Yadav R, Ramakrishna W. 2022. Bacillus subtilis impact on plant growth, soil health and environment: Dr. Jekyll and Mr. Hyde. J. Appl. Microbiol. 132:3543-3562. https://doi.org/10.1111/jam.15480
10.1111/jam.15480Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, Schigel D, Kennedy P, Picard K, Glöckner FO, Tedersoo L, et al. 2019. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 47:D259-D264. https://doi.org/10.1093/nar/gky1022
10.1093/nar/gky102230371820PMC6324048Ozimek E, Hanaka A. 2021. Mortierella species as the plant growth-promoting fungi present in the agricultural soils. Agriculture 11:7. https://doi.org/10.3390/agriculture11010007
10.3390/agriculture11010007Philippot L, Raaijmakers JM, Lemanceau P, van der Putten WH. 2013. Going back to the roots: the microbial ecology of the rhizosphere. Nat. Rev. Microbiol. 11:789-799. https://doi.org/10.1038/nrmicro3109
10.1038/nrmicro3109Rubin RL, Ballantine KA, Hegberg A, Andras JP. 2021. Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland. PLOS ONE 16:e0260933. https://doi.org/10.1371/journal.pone.0260933
10.1371/journal.pone.026093334919560PMC8683025Sahrawat KL. 2004. Organic matter accumulation in submerged soils. Adv. Agron. 81:169-201. https://doi.org/10.1016/S0065-2113(03)81004-0
10.1016/S0065-2113(03)81004-0Tedersoo L, Bahram M, Toots M, Diédhiou AG, Henkel TW, Kjøller R, Smith ME. 2014. Global diversity and geography of soil fungi. Science 346:1256688. https://doi.org/10.1126/science.1256688
10.1126/science.1256688Van Der Heijden MGA, Bardgett RD, van Straalen NM. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol. Lett. 11:296-310. https://doi.org/10.1111/j.1461-0248.2007.01139.x
10.1111/j.1461-0248.2007.01139.x- Publisher :Korean Society of Soil Science and Fertilizer
- Publisher(Ko) :한국토양비료학회
- Journal Title :Korean Journal of Soil Science and Fertilizer
- Journal Title(Ko) :한국토양비료학회 학회지
- Volume : 58
- No :3
- Pages :357-368
- Received Date : 2025-07-31
- Revised Date : 2025-08-18
- Accepted Date : 2025-08-19
- DOI :https://doi.org/10.7745/KJSSF.2025.58.3.357


Korean Journal of Soil Science and Fertilizer







